Raghava, Gajendra P.S.: search on Z-Library

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1

Open Source Software and Web Services for Designing Therapeutic Molecules

Singla, Deepak, Dhanda, Sandeep Kumar, Chauhan, Jagat Singh, Bhardwaj, Anshu, Brahmachari, Samir K., Consortium, Open Source Drug Discovery, Raghava, Gajendra P.S.

Journal:

Current Topics in Medicinal Chemistry

Year:

2013

Language:

english

File:

PDF, 438 KB

english, 2013

2

Assessing the population coverage of a health demographic surveillance system using satellite imagery and crowd-sourcing

Di Pasquale, Aurelio, McCann, Robert S., Maire, Nicolas, Raghava, Gajendra P. S.

Journal:

Year:

2017

Language:

english

File:

PDF, 7.66 MB

english, 2017

3

Benchmarking of different molecular docking methods for protein-peptide docking

Agrawal, Piyush, Singh, Harinder, Srivastava, Hemant Kumar, Singh, Sandeep, Kishore, Gaurav, Raghava, Gajendra P. S.

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.36 MB

english, 2019

4

CancerLivER: a database of liver cancer gene expression resources and biomarkers

Kaur, Harpreet, Bhalla, Sherry, Kaur, Dilraj, Raghava, Gajendra PS

Journal:

Year:

2020

File:

PDF, 943 KB

2020

5

Bridging Innate and Adaptive Antitumor Immunity Targeting Glycans

Pashov, Anastas, Monzavi-Karbassi, Bejatolah, Raghava, Gajendra P. S., Kieber-Emmons, Thomas

Journal:

Journal of Biomedicine and Biotechnology

Year:

2010

Language:

english

File:

PDF, 336 KB

english, 2010

6

Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics

Dhanda, Sandeep Kumar, Usmani, Salman Sadullah, Agrawal, Piyush, Nagpal, Gandharva, Gautam, Ankur, Raghava, Gajendra P.S.

Journal:

Briefings in Bioinformatics

Year:

2016

Language:

english

File:

PDF, 945 KB

english, 2016

7

AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes

Sharma, Neelam, Patiyal, Sumeet, Dhall, Anjali, Pande, Akshara, Arora, Chakit, Raghava, Gajendra P S

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 826 KB

2020

8

Classification of early and late stage liver hepatocellular carcinoma patients from their genomics and epigenomics profiles

Kaur, Harpreet, Bhalla, Sherry, Raghava, Gajendra P. S., Amankwah, Ernest K.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.40 MB

english, 2019

9

Machine learning-based identification of genetic interactions from heterogeneous gene expression profiles

Park, Chihyun, Kim, JungRim, Kim, Jeongwoo, Park, Sanghyun, Raghava, Gajendra P. S.

Journal:

Year:

2018

Language:

english

File:

PDF, 10.74 MB

english, 2018

10

Assessing the Primary Data Hosted by the Spanish Node of the Global Biodiversity Information Facility (GBIF)

Otegui, Javier, Ariño, Arturo H., Encinas, María A., Pando, Francisco, Raghava, Gajendra P. S.

Journal:

Year:

2013

Language:

english

File:

PDF, 4.32 MB

english, 2013

11

Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway ofMycobacterium tuberculosis

Aarti Garg, Rupinder Tewari, Gajendra PS Raghava

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.31 MB

english, 2010

12

Prediction of uridine modifications in tRNA sequences

Panwar, Bharat, Raghava, Gajendra PS

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.31 MB

english, 2014

13

[ACM Press the 8th ACM International Conference - Boston, Massachusetts, USA (2017.08.20-2017.08.23)] Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17 - Challenges in Prediction of different Cancer Stages using Gene Expression Profile of Cancer Patients

Bhalla, Sherry, Sharma, Suresh, Raghava, Gajendra Pal Singh

Year:

2017

Language:

english

File:

PDF, 504 KB

english, 2017

14

GlycoPP: A Webserver for Prediction of N- and O-Glycosites in Prokaryotic Protein Sequences

Chauhan, Jagat S., Bhat, Adil H., Raghava, Gajendra P. S., Rao, Alka, Burchell, Joy Marilyn

Journal:

Year:

2012

Language:

english

File:

PDF, 544 KB

english, 2012

15

Identification of ATP binding residues of a protein from its primary sequence

Jagat S Chauhan, Nitish K Mishra, Gajendra PS Raghava

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 335 KB

english, 2009

16

Prediction and classification of ncRNAs using structural information

Panwar, Bharat, Arora, Amit, Raghava, Gajendra PS

Journal:

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

17

Designing of promiscuous inhibitors against pancreatic cancer cell lines

Kumar, Rahul, Chaudhary, Kumardeep, Singla, Deepak, Gautam, Ankur, Raghava, Gajendra P. S.

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 2.03 MB

english, 2014

18

Identification and characterization of novel protein-derived arginine-rich cell-penetrating peptides

Gautam, Ankur, Sharma, Minakshi, Vir, Pooja, Chaudhary, Kumardeep, Kapoor, Pallavi, Kumar, Rahul, Nath, Samir K., Raghava, Gajendra P.S.

Journal:

European Journal of Pharmaceutics and Biopharmaceutics

Year:

2015

Language:

english

File:

PDF, 3.54 MB

english, 2015

19

SATPdb: a database of structurally annotated therapeutic peptides

Singh, Sandeep, Chaudhary, Kumardeep, Dhanda, Sandeep Kumar, Bhalla, Sherry, Usmani, Salman Sadullah, Gautam, Ankur, Tuknait, Abhishek, Agrawal, Piyush, Mathur, Deepika, Raghava, Gajendra P.S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 948 KB

english, 2015

20

In Silico Approach for Prediction of Antifungal Peptides

Agrawal, Piyush, Bhalla, Sherry, Chaudhary, Kumardeep, Kumar, Rajesh, Sharma, Meenu, Raghava, Gajendra P. S.

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 2.30 MB

english, 2018

21

Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines

Singh, Harinder, Kumar, Rahul, Singh, Sandeep, Chaudhary, Kumardeep, Gautam, Ankur, Raghava, Gajendra P. S.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.87 MB

english, 2016

22

Crumple: A Method for Complete Enumeration of All Possible Pseudoknot-Free RNA Secondary Structures

Bleckley, Samuel, Stone, Jonathan W., Schroeder, Susan J., Raghava, Gajendra P. S.

Journal:

Year:

2012

Language:

english

File:

PDF, 473 KB

english, 2012

23

A Hybrid Color Space for Skin Detection Using Genetic Algorithm Heuristic Search and Principal Component Analysis Technique

Maktabdar Oghaz, Mahdi, Maarof, Mohd Aizaini, Zainal, Anazida, Rohani, Mohd Foad, Yaghoubyan, S. Hadi, Raghava, Gajendra P. S.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.06 MB

english, 2015

24

Prediction of risk scores for colorectal cancer patients from the concentration of proteins involved in mitochondrial apoptotic pathway

Lathwal, Anjali, Arora, Chakit, Raghava, Gajendra P. S., Batra, Surinder K.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.58 MB

english, 2019

25

RareLSD: a manually curated database of lysosomal enzymes associated with rare diseases

Akhter, Sana, Kaur, Harpreet, Agrawal, Piyush, Raghava, Gajendra P S

Journal:

Year:

2019

File:

PDF, 222.18 MB

2019

26

Prediction of nuclear proteins using SVM and HMM models

Manish Kumar, Gajendra PS Raghava

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 468 KB

english, 2009

27

Branching of thep-nitrophenol (PNP) degradation pathway inburkholderiasp. Strain SJ98: Evidences from genetic characterization of PNP gene cluster

Surendra Vikram, Janmejay Pandey, Nidhi Bhalla, Gunjan Pandey, Anuradha Ghosh, Fazlurrahman Khan, Rakesh K Jain, Gajendra P S Raghava

Journal:

Year:

2012

Language:

english

File:

PDF, 351 KB

english, 2012

28

VaccineDA: Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants

Nagpal, Gandharva, Gupta, Sudheer, Chaudhary, Kumardeep, Kumar Dhanda, Sandeep, Prakash, Satya, Raghava, Gajendra P. S.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 898 KB

english, 2015

29

PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies

Aithal, Abhijit, Sharma, Arun, Joshi, Shilpy, Raghava, Gajendra P. S., Varshney, Grish C., Kaufmann, Gunnar F.

Journal:

Year:

2012

Language:

english

File:

PDF, 188 KB

english, 2012

30

PCaAnalyser: A 2D-Image Analysis Based Module for Effective Determination of Prostate Cancer Progression in 3D Culture

Hoque, Md Tamjidul, Windus, Louisa C. E., Lovitt, Carrie J., Avery, Vicky M., Raghava, Gajendra P. S.

Journal:

Year:

2013

Language:

english

File:

PDF, 4.57 MB

english, 2013

31

PalmPred: An SVM Based Palmitoylation Prediction Method Using Sequence Profile Information

Kumari, Bandana, Kumar, Ravindra, Kumar, Manish, Raghava, Gajendra P. S.

Journal:

Year:

2014

Language:

english

File:

PDF, 535 KB

english, 2014

32

Supervised Learning Classification Models for Prediction of Plant Virus Encoded RNA Silencing Suppressors

Jagga, Zeenia, Gupta, Dinesh, Raghava, Gajendra P. S.

Journal:

Year:

2014

Language:

english

File:

PDF, 783 KB

english, 2014

33

Genomic Models of Short-Term Exposure Accurately Predict Long-Term Chemical Carcinogenicity and Identify Putative Mechanisms of Action

Gusenleitner, Daniel, Auerbach, Scott S., Melia, Tisha, Gómez, Harold F., Sherr, David H., Monti, Stefano, Raghava, Gajendra P. S.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.14 MB

english, 2014

34

Prediction of Antitubercular Peptides From Sequence Information Using Ensemble Classifier and Hybrid Features

Usmani, Salman Sadullah, Bhalla, Sherry, Raghava, Gajendra P. S.

Journal:

Frontiers in Pharmacology

Year:

2018

Language:

english

File:

PDF, 1.95 MB

english, 2018

35

Fingerprinting Method for Phylogenetic Classification and Identification of Microorganisms Based on Variation in 16S rRNA Gene Sequences

Raghava, Gajendra P.S., Solanki, Rajesh J., Soni, Vishal, Agrawal, Pushpa

Journal:

Year:

2000

Language:

english

File:

PDF, 247 KB

english, 2000

36

ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank

Agrawal, Piyush, Patiyal, Sumeet, Kumar, Rajesh, Kumar, Vinod, Singh, Harinder, Raghav, Pawan Kumar, Raghava, Gajendra P S

Journal:

Year:

2019

Language:

english

File:

PDF, 12.65 MB

english, 2019

37

Identification of DNA-binding proteins using support vector machines and evolutionary profiles

Manish Kumar, Michael M Gromiha, Gajendra PS Raghava

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 471 KB

english, 2007

38

CyclinPred: A SVM-Based Method for Predicting Cyclin Protein Sequences

Kalita, Mridul K., Nandal, Umesh K., Pattnaik, Ansuman, Sivalingam, Anandhan, Ramasamy, Gowthaman, Kumar, Manish, Raghava, Gajendra P. S., Gupta, Dinesh, Stajich, Jason E.

Journal:

Year:

2008

Language:

english

File:

PDF, 393 KB

english, 2008

39

BIS-CATTLE: A Web Server for Breed Identification using Microsatellite DNA Markers

Jaiswal, Sarika, Dhanda, Sandeep Kumar, Iquebal, M. A., Arora, Vasu, Shah, Tejas M., Angadi, U. B., Joshi, Chaitanya G., Raghava, Gajendra P.S., Rai, Anil, Kumar, Dinesh

Journal:

American Journal of Bioinformatics

Year:

2016

File:

PDF, 216 KB

2016

40

Open source drug discovery– A new paradigm of collaborative research in tuberculosis drug development

Anshu Bhardwaj, Vinod Scaria, Gajendra Pal Singh Raghava, Andrew Michael Lynn, Nagasuma Chandra, Sulagna Banerjee, Muthukurussi V. Raghunandanan, Vikas Pandey, Bhupesh Taneja, Jyoti Yadav, Debasis Das

Journal:

Year:

2011

Language:

english

File:

PDF, 818 KB

english, 2011

41

KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials

Aarti Garg, Rupinder Tewari, Gajendra PS Raghava

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.70 MB

english, 2010

42

Machine learning techniques in disease forecasting: a case study on rice blast prediction

Rakesh Kaundal, Amar S Kapoor, Gajendra PS Raghava

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 683 KB

english, 2006

43

Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information

Bharat Panwar, Sudheer Gupta, Gajendra P S Raghava

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 965 KB

english, 2013

44

CancerPDF: A repository of cancer-associated peptidome found in human biofluids

Bhalla, Sherry, Verma, Ruchi, Kaur, Harpreet, Kumar, Rajesh, Usmani, Salman Sadullah, Sharma, Suresh, Raghava, Gajendra P. S.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.68 MB

english, 2017

45

In silico approaches for predicting the half-life of natural and modified peptides in blood

Mathur, Deepika, Singh, Sandeep, Mehta, Ayesha, Agrawal, Piyush, Raghava, Gajendra P. S., van Veen, Hendrik W.

Journal:

Year:

2018

Language:

english

File:

PDF, 959 KB

english, 2018

46

Feasibility of Using Clinical Element Models (CEM) to Standardize Phenotype Variables in the Database of Genotypes and Phenotypes (dbGaP)

Lin, Ko-Wei, Tharp, Melissa, Conway, Mike, Hsieh, Alexander, Ross, Mindy, Kim, Jihoon, Kim, Hyeon-Eui, Raghava, Gajendra P. S.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

47

Analysis and prediction of cholangiocarcinoma from transcriptomic profile of patients

Kaur, Harpreet, Bhalla, Sherry, Garg, Divya, Mehta, Nikhil, Raghava, Gajendra P.S.

Journal:

Journal of Hepatology

Year:

2020

File:

PDF, 379 KB

2020

48

Identification of B-cell epitopes in an antigen for inducing specific class of antibodies

Gupta, Sudheer, Ansari, Hifzur Rahman, Gautam, Ankur, Raghava, Gajendra PS

Journal:

Year:

2013

Language:

english

File:

PDF, 1.07 MB

english, 2013

49

Prioritization of anticancer drugs against a cancer using genomic features of cancer cells: A step towards personalized medicine

Gupta, Sudheer, Chaudhary, Kumardeep, Kumar, Rahul, Gautam, Ankur, Nanda, Jagpreet Singh, Dhanda, Sandeep Kumar, Brahmachari, Samir Kumar, Raghava, Gajendra P. S.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 568 KB

english, 2016

50

Optimum strata boundaries and sample sizes in health surveys using auxiliary variables

Reddy, Karuna Garan, Khan, Mohammad G. M., Khan, Sabiha, Raghava, Gajendra P. S.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.64 MB

english, 2018

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